species:   Cocin
pid:       PID1279
parent:    cci-milR-24
paralog:   
locus:     scaffold_302:7795-7849
matures:   ['UGAAUCGCUAUCUCCGAUGGU', 'CGUCCGAGAUUCCGAGUCACUGACUG']
srr:       SRR9972092
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972092.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972092.cram scaffold_302:7795-7849

0 out of bounds
13 alignments
11 proper strand
10 stranded perfect matches

*****************             ************************ 
UGAAUCGCUAUCUCCGAUGGUCUGUCUCCGUCCGAGAUUCCGAGUCACUGACUGG
(((.(((..(((((.(((((.......))))).)))))..))).)))........
UGAAUCGCUAUCUCCGAUGGU---------------------------------- l=21 a=0 c
----------------------------CGUCCGAGAUUCCGAGUCACUGACUG- l=26 a=0 c*
--------------------------------CGAGAUUCCGAGUCACUGACUG- l=22 a=10 ma
------------------------------------------------------- l=0 a=0 ma*

--------------------------------CGAGAUUCCGAGUCACUGACUG- l=22 a=10 (ma)
--------------------------------CGAGAUUCCGAGUCACUGgCUG- l=22 a=1 

mb-00010
ax-0001110
ku-01
ss-111111101010
fn-111
